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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs7030280 chr9:100535267 C/T ABCC11 chr16:48200821-48281479:- 0.3 6.04 3.02E-9 Box Plot
THCA rs7030280 chr9:100535267 C/T BMPR1A chr10:88516358-88692595:+ -0.25 -6.4 3.81E-10 Box Plot
THCA rs7030280 chr9:100535267 C/T CLDN2 chrX:106143394-106174091:+ 0.26 6.14 1.72E-9 Box Plot
THCA rs7030280 chr9:100535267 C/T EFNB2 chr13:107142079-107187462:- -0.25 -5.95 5.21E-9 Box Plot
THCA rs7030280 chr9:100535267 C/T EML5 chr14:89078775-89259096:- 0.3 6.84 2.41E-11 Box Plot
THCA rs7030280 chr9:100535267 C/T EPDR1 chr7:37723446-37991543:+ 0.34 7.6 1.58E-13 Box Plot
THCA rs7030280 chr9:100535267 C/T GGT5 chr22:24615622-24641110:- 0.27 6.21 1.17E-9 Box Plot
THCA rs7030280 chr9:100535267 C/T LRRC42 chr1:54411750-54433841:+ -0.23 -6.03 3.21E-9 Box Plot
THCA rs7030280 chr9:100535267 C/T MALL chr2:110841447-110874143:- 0.29 5.91 6.59E-9 Box Plot
THCA rs7030280 chr9:100535267 C/T NKX6-1 chr4:85413140-85419603:- 0.5 8.77 3.05E-17 Box Plot
THCA rs7030280 chr9:100535267 C/T PLCE1 chr10:95790569-96092580:+ 0.26 6.08 2.53E-9 Box Plot
THCA rs7030280 chr9:100535267 C/T SEMA5B chr3:122628040-122747452:- -0.31 -5.9 6.83E-9 Box Plot
THCA rs7030811 chr9:22288140 T/A LOC100129034 chr9:127115752-127121461:+ 0.55 6.09 2.26E-9 Box Plot
THCA rs7031386 chr9:100665669 G/T FAM81A chr15:59664892-59815748:+ -0.26 -6.02 3.39E-9 Box Plot
THCA rs7032019 chr9:100548144 G/A BMPR1A chr10:88516358-88692595:+ -0.24 -6.18 1.35E-9 Box Plot